SUPERVISION OF GRADUATE
STUDENTS
CURRENT
GRADUATE STUDENTS
Doctoral
Students
|
|
Name |
Dept/University |
Start
Year |
Co-supervisor |
|
1 |
Dina
Schneidman-Duhovny |
|
2003 |
|
|
2 |
Oranit Dror |
|
2004 |
Ruth
Nussinov, MedFac,
TAU |
|
3 |
Alexandra
Shulman-Peleg |
|
2004 |
Ruth
Nussinov, MedFac,
TAU |
|
4 |
Dan
Fishelovitz |
Dept.
of Human Genetics, MedFac, TAU |
2004 |
Ruth
Nussinov, MedFac,
TAU |
|
5 |
Ilona Kifer |
School
Computer Science,
TAU |
2005 |
Ruth
Nussinov, MedFac,
TAU |
|
6 |
Keren Lasker |
School
Computer Science,
TAU |
2006 |
Andrej
Sali, UCSF |
|
7 |
Idit Buch |
Human
Genetics, MedFac, TAU |
2006 |
Ruth
Nussinov, MedFac,
TAU |
|
8 |
Efrat Mashiach |
School
Computer Science,T
AU |
2008 |
|
Masters
Students
|
|
Name |
Dept/University |
Start
Year |
|
1 |
Mira
Abraham |
|
2004 |
|
2 |
Elad Donsky |
|
2007 |
|
3 |
Aviyah Peri |
|
2008 |
FORMER
GRADUATE STUDENTS
Doctoral
Students
|
|
Name |
Dept/University |
Thesis
Title |
Period |
Co-supervisor |
|
1 |
Yehezkel Lamdan |
CS,NYU |
Geometric
Hashing |
1987-1989 |
J.T. Schwartz, CS,
NYU |
|
2 |
Daniel
Fischer |
CS,TAU |
Structural
Matching Algorithms in Molecular Biology |
1991-1994 |
R. Nussinov |
|
3 |
Raquel
Norel |
CS,TAU
|
Algorithms
for Protein Docking |
1992-1997 |
R. Nussinov |
|
4 |
Bilha (Billie) Sandak |
CS,TAU |
A Method
for Biomolecular Structural
Recognition allowing Conformational Flexibility |
1992-1997 |
R. Nussinov |
|
5 |
Konstantin
Kupeev |
CS,TAU |
A
Structural Method for Shape Recognition |
1993-1997 |
V. Brailovsky |
|
6 |
Hadar Benyamini |
HumGen, MedFac,TAU |
Applying
Novel Geometric Algorithms in the Search for Amyloidogenic Mechanisms |
1999-2004 |
R. Nussinov, MedFac |
|
7 |
Inbal Halperin |
HumGen, MedFac,TAU |
Improved
Docking Schemes Utilizing Biological Information |
2001-2005 |
R. Nussinov, MedFac |
|
8 |
Maxim
Shatsky |
CS,TAU |
The
Common Point Set Problem with Applications to Protein Structure
Analysis |
2001-2006 |
|
|
9 |
Nurit Haspel |
CS,TAU |
Computational
modeling and prediction of self assembling b-sheet rich protein
structures |
2001-2006 |
R. Nussinov, |
|
10 |
Yuval
Inbar |
CS,TAU |
Structure
Prediction of Multimolecular Protein
Complexes |
2003-2007 |
|
Masters
Students
|
|
Name |
Dept/University |
Thesis
Title |
Period |
Co-supervisor |
|
1 |
Ilan Kirsch |
CS,TAU |
Structural
Recognition of Handwritten Hebrew Characters |
1989-1990 |
|
|
2 |
Erez Sali |
CS,TAU |
Texture
Classification in Aerial Photographs and Satellite
Data |
1989-1991 |
|
|
3 |
Ezra(Uzi)
Mutsafy |
CS,TAU
|
Registration
of geographic areas by affine invariant curve
matching |
1990-1993 |
|
|
4 |
Ephraim
(Efi) Cohen |
CS,BGU |
Partial
Matching of 3-D Objects
in CAD/CAM Systems |
1993-1995 |
D. Cohen,
CS, BGU |
|
5 |
Vladimir
Alesker |
CS,TAU |
Rapid
Macromolecule Comparison by Geometric Secondary Structure
Matching |
1993-1995 |
|
|
6 |
Dan
Shappir |
CS,TAU |
Mapping
of NMR interproton distance onto crystallographically determined protein structures by
Computer Vision techniques |
1992-1996 |
|
|
7 |
Michael
Kolko |
CS,TAU |
Recognition
of Articulated 3D Objects from 2D Images |
1993-1996 |
|
|
8 |
Georgy Verbitsky |
CS,TAU |
Structural
Comparison of Flexible
Protein Domains |
1994-1996 |
|
|
9 |
Einat Azarya-Sprinzak |
HumGen, MedFac,TAU |
Mutations
of Spatially Neighboring
Residues in Structurally Conserved Environments |
1994-1996 |
R. Nussinov, |
|
10 |
Maria
Roiterstein-Rosen |
CS,TAU |
Protein
Molecule Surface Comparison
by Computer Vision Techniques |
1994-1997 |
|
|
11 |
Nathaniel
Leibovitz |
CS,NYU |
Multiple
Structural Alignment of Protein Ensembles |
1997-1999 |
|
|
12 |
Maxim
Shatsky |
CS,TAU |
Flexible
Alignment of Protein Molecules |
1999-2001 |
|
|
13 |
Tal
Elkayam, |
HumGen, MedFac,TAU |
Computational
Studies of Protein Binding Sites |
1998-2001 |
R. Nussinov |
|
14 |
Nurit Haspel |
HumGen, MedFac,TAU |
A
Computational Study of Protein Folding Pathways |
1999-2002 |
R. Nussinov |
|
15 |
Mark
Sadov |
CS,TAU |
Flexible
Matching of Drug Molecules |
1996-2002 |
|
|
16 |
Dina
Schneidman-Duhovny |
CS,TAU |
PatchDock: A Method for Binding Site
Detection and Unbound Docking of Rigid Molecules |
2000-2003 |
|
|
17 |
Adi Barzilay |
HumGen, MedFac,TAU |
Detection
and Analysis of Folding-Function Inter-relationship in
Proteins |
2000-2003 |
R. Nussinov, MedFac |
|
18 |
Vladimir
Polyak |
CS,TAU |
BUDDA:
Backbone Unbound Docking Application |
2000-2003 |
|
|
19 |
Oranit Shem-Tov
(Dror) |
CS,TAU |
MASS: A
Method for Multiple Structural Alignment by Secondary
Structures |
2000-2003 |
|
|
20 |
Yuval
Inbar |
CS,TAU |
Prediction
of Protein Structure by Combinatorial Docking |
2001-2003 |
|
|
21 |
Alexandra
Shulman-Peleg |
CS,TAU |
Site-Engine:
Functional Sites Structural Search Engine |
2002-2004 |
|
|
22 |
Assaf Oron |
HumGen, MedFac,TAU |
Predicting
Electrostatic Steering and Encounter Complexes in Protein-Protein
Association Processes |
2002-2004 |
Nussinov, MedFac;
N. Ben Tal, Life
Sc. |
|
23 |
Shira Mintz |
HumGen, MedFac,TAU
|
Computational
Studies of Protein Binding Sites |
2003-2005 |
R. Nussinov |
|
24 |
Gilad Weinreb |
HumGen, MedFac,TAU |
Templating the Building Blocks and a Secondary-Structure
Guided superimposition
tool |
2003-2005 |
R. Nussinov |
|
25 |
Zipora Fligelman
(Shaqed) |
CS,TAU |
FLEX MOL:
A sequence Order Independent Algorithm for Matching
Flexible Molecules by Geometric Hashing |
1999-2005 |
|
|
26 |
Keren Lasker |
CS,TAU |
EMatch: A Method for the Discovery of
Protein Substructures in EM Maps |
2003-2005 |
|
|
27 |
Nelly
Bluvshtein-Andrusier |
CS,TAU |
FireDock: Fast Interaction REfinement in Molecular Docking |
2003-2006 |
R. Nussinov, |
|
28 |
Ido Shapira,
|
CS,TAU |
SiteLight 2: An improved method for protein
binding site prediction
using phage display libraries |
2003-2006 |
|
|
29 |
Aviad Tsherniak |
CS,TAU |
ComaLoop: A Method for Protein |
2004-2006 |
|
|
30 |
Efrat Mashiach |
CS,TAU |
-
(transferred to direct Ph.D. track) |
2006-2008 |
|