August, 2001

July, 2008

&nb= sp;

LIST OF PUBLICATIONS

ARTICLES

1.&n= bsp; V.D. Milman, H. Wolfson, Minkowski Spaces with Extremal Distance from the Euclidean Space= , Israel J. of Math.29 (2-3), 113--13= 1, (1978).

&nb= sp;

2.&n= bsp; J. Bourgain, V. Milman, H. Wolfson, On Type of Metric Spaces,= Transactions of the American Math. Soc., 294(1), 295--317, (1986).

3.&n= bsp; H. Wolfson, E.Schonberg, A. Kalvin, Y. Lamdan, Solving Jigsaw Puzzles by Computer Vision, Annals of Operations Research, 12, 51--64, (1988).

4.&n= bsp; G.Burdea, H.J. Wolfson, Solving Jigsaw Puzzles b= y a Robot,= IEEE Transactions on Robotics and Automation 5(6), 752--764, (1989).<= /span>

5.&n= bsp; H.J. Wolfson, On Curve Matching, IEEE Transactions on Pattern Analysis and Machi= ne Intelligence, 12(5), 483--489, (1990).

&nb= sp;

6.&n= bsp; Y. Lamdan, J.T. Schwartz, H.J. Wolfson, Affine Invariant Model-Based Object Recognition= , IEEE Transactions on Robotics and Automation,= 6(5),= 578--589, (1990).

7.&n= bsp;     E. Kishon, T. Hastie, H. Wolfson, 3-D Curve Matching using Spli= nes, J. of Robotic Systems 8(6), 723-743, (1991).

&nb= sp;

8.&n= bsp;     H.J. Wolfson, Generalizing the Generalized Hough Transform, Pattern Recogn= ition Letters 12(9), 565-573, (1991= ).

&nb= sp;

9.&n= bsp;     R. Nussinov, H.J. Wolfson, Efficient Detection of Three – Dimensional Motifs in Biological Macromol= ecules by Computer Vision Techniques, Proceedings of the National <= st1:City>Academy of Sciences<= /st1:City>, U.S.A., 88, 10495-10499, (1991).

10.&= nbsp; E. Sali,= H. Wolfson, Texture Classification in Aer= ial Photographs and Satellite Data, Int. J. on Remote Sensing 13:18, 3395-3408, (1992).

11.&= nbsp; D. Fisch= er, O. Bachar, R. Nussinov, H.J. Wolfson, An Efficient Automated Computer Vision Based Technique for Detection of Three Dimensional Structural Motifs in Proteins<= /span>, J. of Biomolecular Structure and Dynamics, 9(4), 769-789, (1992).

12.&= nbsp; O. Bacha= r, D. Fischer, R. Nussinov, H.J. Wolfson, A Computer Vision Based Technique for 3-D Sequence-Independent Structural Comparison of Proteins, Protein Engineering 6(3), 279-288 (1993).

13.&= nbsp; D. Fisch= er, R. Norel, H.J. Wolfson, R. Nussinov, Surface Motifs by a Computer Vision Technique: Searches, Detection and Implications for Protein-Ligand Recognition= , PROTEINS: Structure,   Function,   and Genetics, 16, 278-292, (1993).

14.&= nbsp; D. Fisch= er, H. Wolfson and R. Nussinov, Spatial, Sequence-Order-Independent Struct= ural Comparison of α/ β Proteins: Evolutionary Implications, J. of Biom. Struct. & Dyn= amics 11(2), 367-380 (1993).=

&nb= sp;

15.&= nbsp; R. Norel= , D. Fischer, H.J. Wolfson and R. Nussinov, Molecular Surface Recognition by a Computer Vision based Technique, Protein Engineering 7, 39-46, (1994).

16.&= nbsp; S. L. Li= n, R. Nussinov, D. Fischer, H.J. Wolfson, Molecular Surface Representations by Sparse Critical Points, PROTEINS: Structure,   Function,   and Genetics, 18, 94-101, (1994).=

&nb= sp;

17.&= nbsp; R. Norel= , S. L. Lin, H.J. Wolfson, R. Nuss= inov, Shape Complementarity at Protein-Protein Interf= aces, Biopolymers 34, 933-940= (1994).

&nb= sp;

18.&= nbsp; D. Fisch= er, H.J. Wolfson, S. L. Lin, R. Nussinov, Three-dimensional, sequence-order independ= ent Structural Comparison of a Serine Protease against the Crystallographic Database Reveals Active Site Similarities : Potential Implications to Evolu= tion and to Protein Folding, Protein Science 3, 769-778 (1994),

&nb= sp;

19.&= nbsp; D. Fisch= er, S.L. Lin, H. J. Wolfson and R. Nussinov, A Geometry-Based Suite of Molecular Docking Processes, Journal of Molecular Biology, 248, 459-477, (1995).

&nb= sp;

20.&= nbsp; R. Norel= , S. L. Lin, H.J. Wolfson, R. Nuss= inov, Molecular Surface Complementarity at Protein-Protein Interfaces: The Critical Role Played by Surface Normals at Well Placed, Sparse Points in Docking, Journal of Molecular Bi= ology, 252, 263-273, (1995).=

21.&= nbsp; D. Reisf= eld, H. Wolfson, Y. Yeshurun, Context-Free Attentional Operators: The Generalized Symmetry Transform= , Int. J. on Computer Vis= ion, 14(2), 119-130, (1995).

22.&= nbsp; B. Sanda= k, R. Nussinov, and H.J. Wolfson, An Automated Computer Vision and Robotics-Based Technique for 3-D Flexible Biomolecular Docking and Matching= , Computer Applications in the Biosciences (CABIOS), 11(1), 87-99, (1995).

23.&= nbsp; D. Fisch= er, C.J. Tsai, R. Nussinov and H.J. Wolfson, A 3-D Sequence-Independe= nt Representation of the Protein Databank , Protein Engineering, 8(10), 981-997 (1995).

24.&= nbsp; D.Naor, = D. Fischer, R.L. Jernigan, H. J. Wolfson and R. Nussinov, Amino Acid Pair Intercha= nges at Spatially Conserved Locations, Journal of Molecular Biology, 256 (5), 924-938 (1996).

&nb= sp;

25.&= nbsp; C.J. Tsa= i, S.L. Lin, H. J. Wolfson and R. Nussinov, Techniques for Searching= for Structural Similarities Between Protein Cores, Protein Surfaces and Between Protein-Protein Interfaces, Techniques in Protein Chemistry, VII, 419-429, (1996).

26.&= nbsp; C.J. Tsa= i, S.L. Lin, H. J. Wolfson, R. Nussinov, Protein-Protein Interfaces. Architectures = and Interactions in Protein-Protein Interfaces and in Protein Cores. Similariti= es and Differences, Critical Reviews in Biochemistry and Molecular Biology, 3= 1(2), 127-152,= (1996= ).

&nb= sp;

27.&= nbsp; C.J. Tsa= i, S.L. Lin, H. J. Wolfson, R. Nussinov, A Dataset of Protein-Protein Interfaces Generated with a Sequence Order Independent Comparison Technique, Journ= al of Molecular Biology, 260(4), 604-620, (1996).

28.&= nbsp; K.Y. Kup= eev and H.J. Wolfson, A New Method of Estimating Shape Similarity,Pattern Recognition Letters, 17, 873-887, (1996).

29.&= nbsp; V. Alesk= er, R. Nussinov and H. J. Wolfson, Detection of Non-Topological Motifs in Pro= tein Structures, Protein Engineering, 9(12), 1103-1119, (1996).

30.&= nbsp; C.J. Tsa= i, S.L. Lin, H. J. Wolfson, R. Nussinov, Studies of Protein-Protein Interfaces<= /span>: A Statistical Analysis = of the Hydrophobic Effect, Protein Scie= nce, 6, 53-64, (1997).

31.&= nbsp; S.L. Lin= , D. Xu, A. Li, M. Rosen, H.J. Wolfson, R. Nussinov, Investigation of the Enzymatic Mechanism of the Yeast Chorismate Mutase by Docking a Transition State Anal= og, Journal of Molecular Biology, 271(5), 838-845, (1997).

32.&= nbsp; H.J. Wol= fson and I. Rigoutsos, Geometric Hashing: An Overview<= /i>, IEEE Computational Science and Engineering,= 4(4), 10-21, (1997).

&nb= sp;

33.&= nbsp; E. Azarya-Sprinzak, D. Naor, H.J. Wolfson, R. Nussinov<= span dir=3DRTL>, Interchanges of Spatially Neighboring Residues in Structurally Conserved Environments, Protein Engineering, 10= (10), 1109-1122, (1997).

34.&= nbsp; M. Rosen, S.L. Lin, H.J. Wolfson and R. Nussinov, Molecular surface comparisons in searches = for active sites and functional similarity, Protein Engineering, 11, 263-27= 7, (1998).

35.&= nbsp; B. Sanda= k, H.J. Wolfson and R. Nussinov, Flexible Docking Allowing Induced Fit in Proteins: Insights From an Open to Closed Conformational Isomers= , PROTEINS, 32, 159-174, (1998).

&nb= sp;

36.&= nbsp; B. Sanda= k, R. Nussinov, and H.J. Wolfson, A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility, J. of Computational Biology, 5(4), 631--654, (1998).

37.&= nbsp; G. Verbitsky, R. Nussinov, H.J. Wolfson, Flexible Structural Compari= son Allowing Hinge Bending, Swiveling Motions, PROTEINS, 34, 232--254, (1999).

38.&= nbsp; R. Norel= , D. Petrey, H.J. Wolfson and R. Nussinov, Examination of Shape Complement= arity in Docking of Unbound Proteins, PROTEINS, 36, 307--317, (1999).

39.&= nbsp; R. Norel, H.J. Wolfson and R. Nussinov, Small Molecule Recognition: S= olid Angles Surface representation and Molecular Shape Complementarity, Combinatorial Chemistry &am= p; High Throughput Screening, 2, 223-236, (1999).

&nb= sp;

40.&= nbsp; S. Kumar= , B. Ma, C.J. Tsai, H.J. Wolfson and R. Nussinov, Folding Funnels and Conformat= ional Transitions via Hinge-Bending Motions, Cell Biochemistry and Biophysics, 31, 141--16= 4, (1999).

41.&= nbsp; R. Nussi= nov and H.J. Wolfson, Efficient Computational Algorithms for Docking and for Generating and Matching a Libr= ary of Epitopes I. Rigid and Flex= ible Docking Algorithms, Combinatorial Chemistry & High Throughput Screening, = vol. 2, 249--259, (1999).

42.&= nbsp; R. Nussi= nov and H.J. Wolfson, Efficient Computational Algorithms for Docking and for Generating and Matching a Libr= ary of Epitopes II: Computer Vision-Based Techniques for the Generation and Utilization of Functional Epitopes, Combinatorial Chemistry & High Throughput Screening, 2, 261--269, (1999).

&nb= sp;

43.&= nbsp; Z. Hu, B. Ma, H. Wolfson, R. Nussinov, Conservation of Polar Residues as Hot Spots at Prot= ein Interfaces, PROTEINS, 39, 331--342, (2000).

44.&= nbsp; N. Leibowitz, Z.Y. Fligelman, R. Nussinov, H.J. Wolfson, An Automated Multiple Structure Alignment and Detection of a Common Substructural Motif, PROTEINS: Structure, Fu= nction and Genetics, 43, 235--245, (2001).

45.&= nbsp; N. Leibo= witz, R. Nussinov, H.J. Wolfson, MUSTA - a General, Efficient, Automated Me= thod for Multiple Structure Alignment and Detection of Common Motifs: Applicatio= n to Proteins, J. of Computational Biology, 8(2), 93--121, (2001).

&nb= sp;

46.&= nbsp; S. Kumar, H. J. Wolfson and R. Nussinov= ,= Protein Flexibility and Electrostatic Interactions, IBM J. of Research and Development (Special Issue on Deep Computing in the Life Science= s), 43(3-4), 499--512, (2001).=

&nb= sp;

47.&= nbsp; C-J. Tsa= i, B. Ma, Y.Y. Sham, S. Kumar, H. J. Wolfson&= nbsp; and R. Nussinov, A Hierar= chical Building-Block-Based Computational Scheme for Protein Structure Prediction<= /i>, IBM J. of Research and Development= (Special Issue on Deep Computing in the Life Sciences), 43(3-4), 513--523, (2001= ).

&nb= sp;

48.&= nbsp; B. Ma, H= . J. Wolfson and R. Nussinov, Protein Functional Epitopes: Hot Spots, Dynamics and Combinatorial Libraries, Current Opinion in Structural Biology, 11(3), 364--369, (2001).

49.&= nbsp; C-J. Tsa= i, B. Ma, S. Kumar, H. Wolfson and R. Nussinov, Protein Folding: Binding of Conformationally Fluctuating Building Blocks via Population Selection, Critical Reviews in Biochemistry and Molecular Biology, 36(5), 399-433, (2001).

&nb= sp;

50.&= nbsp; B. Ma, M. Shatsky, H.J. Wolfson, R. Nussinov, Multiple Diverse Ligan= ds binding at a Single Site: A Matter of Pre-existing Populations, Protein Science, 11, 184-197, (2002).

&nb= sp;

51.&= nbsp; I= . Halperin, B. Ma, H.J. Wolfson and R. Nussinov, = Principles of Docking: An Overview of Search Algorithms and   a Guide to Scoring Functions,= Proteins, 47, 409-443, (2002).

52.&= nbsp; M. Shats= ky, R. Nussinov, H.J. Wolfson, Flexible Protein Alignment and Hinge Detec= tion, Proteins, 48(2), 242-256, (2002).=

53.&= nbsp; N. Haspel, C-J. Tsai. H.J. Wolfs= on and R. Nussinov, Hierarchical protein folding pathways: A computational study of protein fragments, Proteins, = 51, 203—251, (2003).

54.&= nbsp; H. Benyaminy, K. Gunasekaran, H. Wolfson and R. Nussinov, Conservation and Amyloid Formation: A Study of the Gelsolin-Like Family, Proteins, 51, 266—282, (2003).

55.&= nbsp; D. Schne= idman-Duhovny, Y. Inbar, V. Polak, M. Shatsky, H. Benyamini, A. Barzilay, O. Dror, N. Hasp= el, R. Nussinov, and H.J. Wolfson, Taking Geometry to its Edge: Fast Unbound Rigid (and Hinge-bent) Docking , Proteins, 52, 107—112, (2003).=

56.&= nbsp; N. Haspe= l, C-J. Tsai, H. Wolfson, and R. Nussinov, Reducing the Computational Complexity of Protein Folding via Fragment Folding and Assembly, Protein Science 12, 1177—1187, (2003).

57.&= nbsp; A. Oron,= K. Gunasekaran, H. Wolfson, and R. Nussinov, Using DelPhi to Compute Electrostatic Pot= entials and Asses their Contribution to Interactions, Current Protocols in Bioi= nformatics, 8.4.1-8.4.12, (2003).

58.&= nbsp; B. Ma, T. Elkayam, H. Wolfson and R. Nussinov, Protein-protein Interactions: Structurally Conserved Residues Distinguish between Binding S= ites and Exposed Protein Surfaces, Proc. Nat. Acad. Sc., USA, 100(10), 5772—5777, (2003).

59.&= nbsp; I. Halpe= rin, H.J. Wolfson, and R. Nussinov, SiteLight: Binding Site Prediction using P= hage Display Libraries, Protein Science, 12, 1344-1359, (2003).

60.&= nbsp; H. Benyamini, K. Gunasekaran, H. Wolfson & R. Nussinov, = b= ₂-Microglobulin Amyloidosis: I= nsight from Conservation Analysis and Fib= ril Modelling by Protein Docking Techniques, J. Mol. Biol. 330, 159—174, (2003).<= /o:p>

<= span style=3D'mso-list:Ignore'>61.&= nbsp; O. Dror,= H. Benyamini, R. Nussinov, H.J. Wolfson, MASS : A Method for Multiple Structu= ral Alignment by Secondary Structures, <= b>Bioinformatics, Vol. 19, suppl. 1 (ISMB’03 issue), pp. i95-i104 (2003).=

62. Y. Inbar= , H. Benyamini, R. Nussinov, H.J. Wolfson, Protein Structure Prediction = via Combinatorial Assembly of Sub-structural Units, Bioinformatics, Vol. 19, suppl. 1 (ISMB’03 issue), pp. i158-i168 (2003).

<= span style=3D'mso-list:Ignore'>63.&= nbsp; O. Dror,= H. Benyamini, R. Nussinov, H.J. Wolfson, Multiple Structural Alignment= by Secondary Structures: An Algorithm and Applications, Protein Science 12, 2492-2507, (2003).

<= /p>
<= span style=3D'mso-list:Ignore'>64.&= nbsp; M. Shats= ky, R. Nussinov, H.J. Wolfson, FlexProt: Alignment of Flexible Protein Structures without a Predefinition of Hinge Regions, J. Computational Biolog= y , 11(1), 83—106, (2004).

<= /p>
<= span style=3D'mso-list:Ignore'>65.&= nbsp; O. Dror,= A. Shulman, R. Nussinov, and H.J. Wolfson, Predicting Molecular Interactions in Silico: I. A guide to Pharmacophore Identification and its Applications to Drug Design, Curr. Med. Chem. 11(1), 71--90, (2004).<= /o:p>

<= /p>
<= span style=3D'mso-list:Ignore'>66.&= nbsp; D. Schneidman, R. Nussinov, and H.J. Wolfson, Predicting Molecular Interact= ions in Silico: II. Protein-Protein and Protein-Drug Docking, Curr. Med. Chem. 11(1), 91—107, (2004).

<= /p>
<= span style=3D'mso-list:Ignore'>67.&= nbsp; M. Shats= ky, R. Nussinov, H.J. Wolfson, A Method for Simultaneous Alignment of Multiple Protein Struct= ures, Proteins 56, 143—156, (2004).

<= span style=3D'mso-list:Ignore'>68.&= nbsp; O. Keskin, C.-J. Tsai, H. Wolfson and R. Nussinov, = A New, Str= ucturally Non-Redundant, Diverse Dataset of Protein-Protein Interfaces and its Implic= ations, Protein Science, 13, 1043—1055, (2004).=

<= span style=3D'mso-list:Ignore'>69.&= nbsp; A. Barzilay, S. = Kumar, H. Wolfson and R. Nussinov, A Potential Folding-Function Inter-relationship in Proteins, Proteins, 56, 635—649, (2004).

<= span style=3D'mso-list:Ignore'>70.&= nbsp; T.Gidalevitz, C. Biswas, H. Ding, D. Schneidman-= Duhovny, H.J. Wolfson, F. Stevens, S. Radford, and Y. Argon, Identification of N-te= rminal peptide binding site of GRP94, J. Biol. Chem, 279(16), 16543—16552, (2004= ).

<= /p>
<= span style=3D'mso-list:Ignore'>71.&= nbsp; A. Shulm= an, R. Nussinov and H. J. Wolfson, Recognition of Functional Sites in Protein Structures, J. Mol. Biol., 339, 607—633, (2004).

<= /p>
<= span style=3D'mso-list:Ignore'>72.&= nbsp; I. Halperin, H. Wolfson, and R. Nus= sinov, Protein-Protein Interactions: Coupling of Structurally Conserved Residues and of Hot Spots across Interfaces. Implications for Docking, Structure, 12, 1027—1038, (2004).

<= /p>
<= span style=3D'mso-list:Ignore'>73.&= nbsp; M.Shatsky, O. Dror, D. Schneidman-Duhovny, R. Nussinov, H. Wolfson, = BioInfo3D: A Suite of Tools for Stru= ctural Bioinformatics, Nuc= . Acids Res., 32 (NAR, web server issue), W503—W507, (2004).

<= span style=3D'mso-list:Ignore'>74.&= nbsp; D. Zanuy, N. Haspel, H.H. Tsai, B. Ma, K. Gunasekaran, H. J. Wolfson and R.Nussinov,= Side chain interactions determine the amyloid organization: A single layer b-sheet molecular structure of the calcitonin=
peptide segment 15 – 19, Phys., Biol., 1, 89—99, (2004).

<= /p>
75. H. J. Wolfson, M. Shatsky, D. Duhovny, A. Shulman, B. Ma, and R. Nussinov, Structural Bioinformatics: Advanced Tools for Structural Pattern Discovery in Proteins, Current Protein & Peptide Science, 6 (2), 171—183, (2005= ).

<= /p>
<= span style=3D'mso-list:Ignore'>76.&= nbsp; Y. Inbar, H. J. Wolfson, R. Nussino= v, Multiple Docking for Protein Structure Prediction, Int. J. Robotics Research, 24, 131--150, (2005).

<= /p>
<= span style=3D'mso-list:Ignore'>77.&= nbsp; N. Haspel, D. Zanuy, B. Ma, H. Wolfson, and R. Nussinov, A comparative study= of amyloid fibril formation by residues 15-19 of the human calcitonin hormone:= A single b-sheet model with a small hydrophobic core, J. Mol= . Biol., 345(5), 1213—1227, (2005).

<= span style=3D'mso-list:Ignore'>78.&= nbsp; S. Mintz, A. Shulman-Peleg, H. Wolfson and R. Nussinov, Gene= ration and Analysis of a Protein-Protein Interface Dataset with Similar Chemical a= nd Spatial Patterns of Interactions, Proteins, 61, 6--2= 0, (2005).

<= span style=3D'mso-list:Ignore'>79.&= nbsp; D. Schneidman-Duhovny, Y. Inbar, R. Nussinov and H. = J. Wolfson, Geometry Based Flexible and Symmetric Protei= n Docking, Proteins= , 60, 217--223, (2005).<= b>

<= /p>
<= span style=3D'mso-list:Ignore'>80.&= nbsp; Y. Inbar= , D. Schneidman-Duhovny, I. Halperin, A. Oron, R. Nussinov and H.J. Wolf= son, Approaching the = CAPRI Challenge with an
Efficient Geometry Based Docking, Proteins, 60, 224--231, (2005).

<= span style=3D'mso-list:Ignore'>81.&= nbsp; D. Schneidman-Duhovny, Y. Inbar, R. Nussinov and H. = J. Wolfson, PatchDock and SymmDock: servers for rigid and symmetric docking, Nuc. Acids Res., 33 (NAR, web server issue), W363—W367, (2005).

<= /p>
<= span style=3D'mso-list:Ignore'>82.&= nbsp; A. Shulm= an-Peleg, R. Nussinov and H. J. Wolfson, SiteEngines: Recognition and Comparison = of Binding Sites and Protein-Protein Interfaces, Nuc. Acids Res. 33 (NAR, web server issue), W337—W34= 1, (2005).

<= /p>
<= span style=3D'mso-list:Ignore'>83.&= nbsp; Y. Inbar= , H. Benyamini, R. Nussinov, H. J. Wolfson, Prediction of Multi-Molecular Assemb= lies by Multiple Docking, J. Mol. Biol., 349(2), 241—449, (2005).

<= span style=3D'mso-list:Ignore'>84.&= nbsp; O. Dror, R. Nussinov, H.J. Wolfson, = ARTS: Alignment of RNA Tertiary Structures, Bioinformatics, Vol. 21, (ECCB’2005 issue), ii47—ii53, (2005).

<= /p>
<= span style=3D'mso-list:Ignore'>85.&= nbsp; H. Benyaminy, K. Gunasekaran, H. Wolfson and R. Nussinov, Fibril Modeling by Seque= nce and Structure Conservation Analysis Combined with Protein Docking Technique= s: b= 2-Microglobulin Amyloidosis, = Biochim Biophys Acta, 1753, 121—130, (2005).

<= /p>
<= span style=3D'mso-list:Ignore'>86.&= nbsp; Y. Inbar= , H. Benyamini, R. Nussinov, and H. J. Wolfson, Combinatorial Docking Approach for Structure Prediction of Large Proteins and Multi-Molecular Assemblies, J. Phys. Biol, 2, S156—= S165, (2005).

<= /p>
<= span style=3D'mso-list:Ignore'>87.&= nbsp; M. Shats= ky, R. Nussinov, H.J. Wolfson, Optimization of Multiple Sequence Alignment Based on Multiple Structure Alignment, Proteins, 62, 209—217, (20= 06).

<= /p>
<= span style=3D'mso-list:Ignore'>88.&= nbsp; C. Aleman, D. Zanuy, A.I. Jimenez, C. Cativiela, N. Haspel, J. Zheng, J. Casanovas,= H. Wolfson and R. Nussinov, Concepts and Schemes for the Re-engineering of Physical Protein Modules: Generati= ng Nanodevices via targeted Replacements with Constrained Amino Acids,<= /i> J. Phys. Biol, 2 (4), 156—165, (2006).<= /span>

<= span style=3D'mso-list:Ignore'>89.&= nbsp; M. Shatsky, A. Shulman-Peleg, R. Nussinov and H= .J. Wolfson, The Multiple Common Point Set Problem and its Application to Molecule Binding Pattern Detection, J. of Computational Biology (special RECOMB’2005 issue), 13(2), 407—428, (2006).=

<= /p>
<= span style=3D'mso-list:Ignore'>90.&= nbsp; I= . Halperin, H. Wolfson and= R. Nussinov, Correlated Mutations: Advances and Limitations. A study on Fusion Proteins and the Cohesin-Dockerin Families, Proteins, 63(4), 832—845, (2006).

<= /p>
<= span style=3D'mso-list:Ignore'>91.&= nbsp; H. Benyamini, A. Shulman-Peleg, H.J. Wolfson, B. Belogorodsky, L. Fadeev and M. Gozin, Interaction of C₆₀-Fullerene and Carboxyfullerene with Proteins: Docking and Binding Site Alignment, Bioconjugate Chemistry, 17(2), 378—386, (2006).

<= /p>
<= span style=3D'mso-list:Ignore'>92.&= nbsp; G. Weinr= eb, N. Haspel, H. J. Wolfson, and R. Nussinov, A permissive secondary structure-guided superimposition= tool for clustering of protein fragments toward protein structure prediction via fragment assembly, = Bioinformatics 22(11), 1343—1352, (2006).

<= /p>
<= span style=3D'mso-list:Ignore'>93.&= nbsp; O. Dror,= R. Nussinov, H.J. Wolfson, The ARTS web server for aligning RNA tertiary structures, Nuc. Acids Res. 34 (NAR, web server issue), W412—W415, (2006).

<= /p>
<= span style=3D'mso-list:Ignore'>94.&= nbsp; N. Haspe= l, D. Zanuy, C. Aleman, H. Wolfson = and R. Nussinov, <= i>De novo tubular nanostructure design based on self-assembly of beta-helical protein motifs, Structure, 14 (7), 1137̵= 2;1148, (2006).

<= span style=3D'mso-list:Ignore'>95.&= nbsp; O. Dror, K. Lasker, R. Nussinov and H. Wolfson, EMatch: An Efficient Method for Aligning At= omic Resolution Subunits into Intermediate Resolution cryo-EM Maps of Large Macromolecular Assemblies, Acta Cryst. Sect. D63: Biological Crystallography, 42—49, (2007).

<= span style=3D'mso-list:Ignore'>96.&= nbsp; K. Lasker, O. Dror, M. Shatsky, R. Nussinov, and H. Wolfson, EMat= ch: Discovery of High Resolution Struct= ural Homologues of Protein Domains in Intermediate Resolution Cryo-EM, IEEE/ACM Trans. on Computational Biology and Bioinformatics, 4(1), 2= 8—39, (2007).

<= /p>
<= span style=3D'mso-list:Ignore'>97.&= nbsp; C-J. Tsa= i, J. Zheng, D. Zanuy, N. Haspel, H. Wolfson, C. Aleman and R. Nussinov, Principles of Nanostructures Design with Protein Building Blocks, Proteins, 68(1), 1—27, (2007).

<= span style=3D'mso-list:Ignore'>98.&= nbsp; D. Fishelovitch, S. Shaik, H.= J. Wolfson, R. Nussinov , Structural dynamics of the cooperative binding of organic molecules in the human Cytochrome P450 (Cyp450) 3A4, J. Amer. Chem. Soc. (JACS), 129(6), 1602—1611, (2007).

99.   U. Emekli, D. Schneidman-Duho= vny, H. J. Wolfson, R. Nussinov, T. Haliloglu, HingeProt: Automated Prediction of Hinges in Protein Structures, Proteins, 70(4), 1219—1227, (2007).

<= span style=3D'mso-list:Ignore'>100.=           N. Haspel, D. Zanuy, J. Zheng= , C. Aleman, H. Wolfson and R. Nussinov, Changing the charge distribution of = b-helical = based nanostructures can provide the conditions for charge transfer, <= span style=3D'font-size:12.0pt;mso-bidi-font-family:"Times New Roman"'>Biophysic= al J., 93(1), 245—253, (2007).

<= /p>
<= span style=3D'mso-list:Ignore'>101.=           N. Andrusier, R. Nussinov, H. J. Wolfson, FireDock: Fast Interaction Refinemen= t in Molecular Docking, Proteins, 69, 139—159, (2007).

<= span style=3D'mso-list:Ignore'>102.=           A. Shulman-Peleg= , M. Shatsky, R. Nussinov and H. J. Wolfson, Spatial chemical conservation of ho= t spot interactions in protein-protein complexes, BMC Biology , 5:43 (11pp), (2007).

<= span style=3D'mso-list:Ignore'>103.=           N. Miled, Y. Yan= , W-C. Hon, O. Perisic, M. Zvelebil, Y. Inbar, D. Schneidman-Duhovny, H. J. Wolfson, J.M. Backer and R. L. Williams, <= i>Mechanism of two classes of Cancer Mutations in the Phosphoinoisitide 3-Kinase Catalytic Subunit= , Science, 317 (5835), 239—241, (2007).

<= span style=3D'mso-list:Ignore'>104.=           D. Schneidman-Duhovny, R. Nussinov and H. J. Wolfson, Automatic Prediction of Protein Interactions with Large Scale Motion, Proteins, 69 (4), 764—773, (2007).

<= /p>
<= span style=3D'mso-list:Ignore'>105.=           M. K. Julsing, N. P. Vasilev, D. Schneidman-Duhovny, R. Muntendam, H. J. Woerdenbag, W. J. Quax, H. J. Wolfs= on, I. Ionkova, O. Kayser, = Metabolic stereoselectivity of cytochrome P450 3A4 towards deoxypodophyllotoxin: in silico predictions and experimental validation, European J. of Medicinal Chemistry= , in press, (2007).

<= span style=3D'mso-list:Ignore'>106.=           D. Fischelovitch, C. Hazan, H. Hirao. H.J. Wolfson, R. Nussinov, S. Shai= k, QM/MM study of the active species of the human cytochrome P450 3A4, and the influence thereof of the multiple substrate binding, J Phys Chem B., 111(49), 13822—13832, (2007).

<= /p>
<= span style=3D'mso-list:Ignore'>107.=           M. Topf, K. Lasker, B. Webb, H. Wolfson, W. Chiu. = A. Sali, Protein Structure Fitt= ing and Refinement Guided by Cryo-EM Density, Structure, 16(2), 295—307, (2008).

<= /p>
<= span style=3D'mso-list:Ignore'>108.=           I. Kifer, R. Nussinov, H.J. Wolfson, Constructing Templates for Protein Structure Prediction = by Simulation of Protein Folding Pathways, Proteins, (2008), (Epub ahead= of print – April 23), in press.

<= /p>
<= span style=3D'mso-list:Ignore'>109.=           E. Mashiach, D. Schneidman-Duhovny, N. Andrusie= r, R. Nussinov, H. J. Wolfson, FireDock: A Web Server for Fast Interaction Refinement in Molecular Docking, Nuc. Acids Res. (NAR, web server issue), W229—= ;232, (2008).

<= /p>
<= span style=3D'mso-list:Ignore'>110.=           D. Schneidman-Duhovny, O. Dror, Y. Inbar, R. Nussinov, H. J. Wolfson, A Web Server for Ligand Based Pharmacophore Detection, Nuc. Acids Res. (NAR, web server issue), W223--228, (2008).

<= span style=3D'mso-list:Ignore'>111.=           A. Shulman-Peleg, M. Shatsky, R. Nussinov, H. J. Wolfson, MultiBind and MAPPIS: Web servers for multiple alignment of protein 3D binding sites = and their interactions, Nuc. Acids Res. (NAR, web server issue),       W260—= 264, (2008).

<= span style=3D'mso-list:Ignore'>112.=           E. Yaffe, D. Fischelovitch, H. J. Wolfson, D. Halperin, R. Nussinov, MolAxis: A server for Identification of Chan= nels in Macromolecules, Nuc. Acids Res. (NAR, web server issue), W210—= ;215, (2008).

113.      A. Shulman-Peleg, M. Shatsky, R. Nussinov, H. J. Wolfson, Prediction of interacting single-stranded RNA bases by protein bindi= ng patterns, J. Mol. Biol, 379 (2), 299—316, (2008).

&nb= sp;

<= span style=3D'mso-list:Ignore'>114.=           E. Yaffe, D. Fischelovitch, <= b>H. J. Wolfson, D. Halperin, R. Nussinov, MolAxis: Efficient and Accurate Identificati= on of Channels in Macromolecules, Proteins, (2008), (Epub ahead= of print – April 07), in press.

<= /p>
<= span style=3D'mso-list:Ignore'>115.=           O. Dror, D. Schneidman-Duhovny, A. Shulman-Peleg, R. Nussinov, H. J. Wolfson and R. Sharan, Structural Similarity of Genetically Interacting Proteins, BMC Systems Biology, (2008), accepted.

<= /p>

CHAPTERS IN BO= OKS

116.=       G. Burdea, H.J. Wolfson, Solving Jigsaw Puzzles U= sing a Robot,= In "Intelligent Robotic Systems" (S. Tzafestas, ed.), Marcel Dekker Inc., New York, Chapter 17, 637-671 (1991).

&nb= sp;

117.=       Y. Yeshurun, D. Reisfeld, H. Wolfson= , Symmetry: a Context Free= Cue for Foveated Vision, In ``Neural Networks for Perception" (H. Wechsler, ed.), Academic Press, Vol. 1, Chapter II.15, 477-491, (1992).

&nb= sp;

118.=       H.J. Wolfson, Y. Lamdan, Transformation Invariant Indexing,= In ``Geometric Invariants in Computer Vision" (J. Mundy, A. Zisserman, eds.), MIT P= ress, Chapter 17, 335-353 (1992).

119.=       H.J. Wolfson and R. Nussinov<= span style=3D'font-size:12.0pt;mso-fareast-font-family:"MS Mincho";mso-bidi-font= -family: "Times New Roman";mso-fareast-language:EN-US'>, From Computer Vision to Protein Structure and Association, In ``Computational Methods in Molecular Biology” (S. Salzberg, D.B. Searls, S. Kasif<= span style=3D'font-size:12.0pt;mso-fareast-font-family:"MS Mincho";mso-bidi-font= -family: "Times New Roman";mso-fareast-language:EN-US'>, eds.), Elsevier Science B.V= ., Chapter 14, 313-334 (1998).

120.=       H.J. Wolfson, R. Nussinov, Geometrical Docking Algorithms: A Practical Approach, In ``Methods in Molecular Biology, vo= l. 143 : Protein Structure Prediction", (D. Webster, ed.), Humana Press,<= span style=3D'mso-spacerun:yes'> Totowa, NJ, Chapter 17, 377-397, (2000).

&nb= sp;

121.=       C. J. Tsai, R. Norel, H. Wolfson, J. V. Maizel,= and R. Nussinov, Protein-ligand interactions: Energetic contributions and shape complementarity<= span style=3D'font-size:12.0pt;mso-fareast-font-family:"MS Mincho";mso-bidi-font= -family: "Times New Roman";mso-fareast-language:EN-US'>, In ``Encyclopedia of Life Sciences&qu= ot; (S. Robertson, ed.), London, Macmillan Publishers Ltd., Nature Publishing group, 8pp., web-based encyclopedia www.els.net, (20= 01) .

122.=       B. Ma, S. Kumar, C. J. Tsai, H.J. Wolfson, N. Sinha, and R. Nussinov= , Protein-ligand interacti= ons: Induced Fit? = , In ``Encyclopedia of Life Sciences" (S. Robertson, = ed.), London,= Macmi= llan Publishers Ltd., Nature Publishing group, 8pp., web-based encyclopedia www.els.net, (2001)= .

123.=       R. Nussinov, B. Ma, and H.J. Wolfson= , Computational Metho= ds for Docking and Applications to Drug Design: Functional Epitopes and Combinatorial Libraries, In "Current Topics= in Computational Biology" (T. Jiang, Y. Xu, M.Q. Zhang, ed.’s), MIT Press, Chapter 19, = 503-524, (2002).

&nb= sp;

124.=       N. Haspel. C-J. Tsai, H.J. Wolfson and R. Nussi= nov, From the Building Blocks Model to Protein Structure Prediction, In "Protein Structure Prediction : Bioinformatic Approach" (I.Tsigelny, ed.), International University Line, La Jolla, CA., chapter 8, 201-226, (2002).

125.=       S. Kumar, A. Barzilai, N. Haspel. Y.Y. Sham, C-= J. Tsai, H.J. Wolfson and R. Nussinov, Critical Building Blocks in Proteins: A Co= mmon Theme for Folding and Function, In "Recent Research Developments in Protein Folding, Stability and Design" (M.M. Gromiha and S. Selv= araj, ed.’s), Chapter 15, Research Signpost, Kerala, India, (2002).

126= .      H.J. Wolfson, Spatial Pattern Detection in Structural Bioinformatics<= /i>, In &#= 8220;Mathematical Methods for Protein Structure Analysis and Design”, (C. Guerra= and S. Istrail, ed.’s), Lec= ture Notes in Bioinformatics 2666, Springer Verlag, Chapter 2, pp. 35-56, (2003)= .

127= .      N. Haspel, D. Zanuy, H.H. Tsai, B. Ma, H. Wolfson, = and R. Nussinov, Computational appr= oaches and tools for establishing structural models for short amyloid-forming pept= ides, In “Amyloid P= roteins: The Beta Pleated Sheet Conformation And Disease”, (J.D. Sipe, ed.), VCH-Wiley, Chapter 13, pp. 301̵= 2;316, (2005).

=

128= .      O. Dror , A. Shulman-Peleg , = R. Nussinov , H.J. Wolfson, Predi= cting molecular interactions in silico: I. A updated guide to pharmacophore identification and its applicatio= ns to drug design,. "Frontier= s in Medicinal Chemistry", Vol.3, (A.U. Rahman and A.B. Reitz, eds), Bentham Science, pp. 551—584, (2006).

&nb= sp;

129= .      D. Schneidman, R. Nussinov, and H.J. Wolfson, Predicting Molecular Interact= ions in Silico: II. Protein-Protein and Protein-Drug Docking, "Frontiers in Medicinal Chemistry",   Vol.3, (A.U. Rahman and A.B. = Reitz, eds), Bentham Science, pp. 585—613, (2006).

&nb= sp;

130= .      N. Haspel, G. Weinreb, Y. Inbar, H.H. Tsai, C.J. Tsai, H.J. Wolfson, R. Nussinov, A hierarchical protein folding scheme based on the building block folding model, Methods= Mol Biol., vol. 350, 189-204, (2007).

=

131= .      M. Shats= ky, R. Nussinov, H.J. Wolfson, Algorithms for Multiple Structure Alignment and Structure Derived Multiple Sequence Alignment, Methods= Mol Biol., vol. 413, 125--146, (2007).

=

=

ARTICLES IN PE= ER-REVIEWED CONFERENCE PROCEEDINGS

132.=       E. Kishon, H. Wolfson, 3-D Curve Matching, Proc. of the AAAI Works= hop on Spatial Reasoning and Multi-Sensor Fusion, St.Charles, Illinois, Oct. 1987, pp.250-261.

133.=       H. Wolfson, On Curve Matching, Proc. of the IEEE Computer Soc. Workshop on Computer Vision, Miami-Beach, Florida, Nov.30-Dec.2 1987, pp.307-310.=

&nb= sp;

134.=       Y. Lamdan, J.T. Schwartz, H. Wolfson= , On Recognition of 3-D Ob= jects from 2-D Images, Proc. of the IEEE International Conference on Robotics and Automation, Philadelphia, Pa., April 1988, pp. 1407-1413.

&nb= sp;

135.=       Y. Lamdan, J.T. Schwartz, H.J. Wolfson, Object Recognition by Af= fine Invariant Matching, Proc. of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Ann-Arbor, Michigan, June 1988, pp. 335-344<= /span>.

136.=       J. Hong, H. Wolfson, An Improved Model-Based Matching Method using Footprints, Proc. of the 9'th International Conference on Pattern Recognition, R= ome, Italy, Nov. 1988, pp. 72-78.

&nb= sp;

137.=       Y. Lamdan, H.J. Wolfson, Geometric Hashing: A General and Efficient Model-Based Recognition = Scheme, Proc. of the Second International Conference on Computer Vision, Tampa, Florida= , Dec. 1988, pp. 238-249<= /span>.

138.=       H.J. Wolfson, Model Based Object Recognitio= n by `Geometric Hashing’, Proc. of the First European Conference on Computer Vision, Antibes, France, April 1990, pp. 526-536, Lecture Notes in Computer Science 427, Springer Verlag.

139.=       E.Kishon, H. Wolfson, T. Hastie, 3-D Curve Matching using Splines, Proc. of the First European Conference on Computer Vision, Antibes,France, April 1990, pp. 589-591, Lecture Notes in Comput= er Science 427, Springer Verlag.=

140.=       D. Reisfeld, H. Wolfson, Y. Yeshurun, Detection of Interest Points = Using Symmetry, Third International Conference on Computer Vision, pp. 62-65, Dec. 1990, Osaka, Japan<= /span>.

&nb= sp;

141.=       E. Sali, H. Wolfson, Texture Classification in Aerial Photographs and Satellite Data, Proc. of the 7'th Israeli Confer= ence on AI,= Compu= ter Vision and Pattern Recognition, Dec. 1990, pp. 325-334, Elsevier, North-Holland.

142.=       D.<= span dir=3DRTL style=3D'font-size:12.0pt;mso-fareast-font-family:"MS Mincho";mso= -bidi-font-family: "Times New Roman";mso-fareast-language:EN-US'> Reisfeld, H. Wolfson, Y. Yesh= urun, Realization of the Intui= tive Notion of Symmetry for Feature Detection, Proc. of the 7'th Israeli Conference on AI, Computer Vision and Pattern Recognition, Dec. 1990= , pp. 335-344, Elsevier, North-Holland.=

143.=       H.J. Wolfson, On the Recognition of Articulated Objects (Generalizing the Generalized Hough Transform), Pro= c. of the IAPR International Wor= kshop on Visual Form, pp. 603-612, May 1991, Capri, Italy<= /span>, Plenum Press.

&nb= sp;

144.=       A. Beinglass, H.J. Wolfson, Articulated Object Recognition, or: How to Generalize the Generalized Hough Transform, Proc. of the 1991 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 461-466, June 1991,= Maui, Hawaii.

145.=       Y. Lamdan, H.J. Wolfson, On the Error Analysis of `Geometric Hashing', Proc. of the 1991 IEEE Computer Society Conference on Computer Vision and Pattern Recognition= , pp. 22-27, June 1991, M= aui, Hawaii;= (a= lso Courant Inst. Robotics Report 213, Oct. 1989).

146.=       D. Fischer, R. Nussinov, H.J. Wolfson, 3-D Substructure Matchin= g in Protein Molecules ,= 3’rd Symposium on Combinatorial Pattern Matching, April 1992, Tucson, Ari= zona, USA,= Lectu= re Notes in Computer Science 644, pp. 136-150, Springer-Verlag.

&nb= sp;

147.=       D. Fischer, R. Norel, R. Nussinov, H.J. Wolfson, 3-D Do= cking of Protein Molecules, 4'th Symposium on Combinatorial Pattern Matching, June 1993, Padova, Ital= y, Lecture Notes in Comput= er Science 684, pp. 20-34, Springer-Verlag.=

148.=       B. Sandak, R. Nussinov, H.J. Wolfson, 3-D Flexible Docking of Molecules,Workshop on Shape and Pattern Matching in Computational Biology (held in conjunction with the 1994 IEEE Computer Society Conference on Computer Vision and Pattern Recognition), Ju= ne 1994, Seattle, Washington, pp. 41-54.=

149.=       E. Cohen, H.J. Wolfson, Partial Matching of 3-D Objects in CAD/CAM Systems, 12’th International Conference on Pat= tern Recognition, Oct. 1994, Jerusalem, Israel, pp. 483-487.

&nb= sp;

150.=       K. Kupeev, H.J. Wolfson, On Shape Similarity<= /span>, 12'th International Conference on Pattern Recognition, Oct. 1994, Jerusalem= , Israel, pp. 227-231.

151.=       D. Fischer, S. Lin, R. Nussinov, H.J. Wolfson, Docking of Protein Molec= ules, 12'th International Conference on Pattern Recognition, Oct. 1994, Jerusalem= , Israel, pp. 145-149.

&nb= sp;

152.=       K.Y. Kupeev, H.J. Wolfson, Perceptual Convexity, SPIE International Symp= osium on Vision Geometry IV, 1995, USA, Proc. SPIE, Vol. 2573, pp.125-136 .

153.=       B. Sandak, R. Nussinov, H.J. Wolfson, Docking of Conformationa= lly Flexible Proteins, 7’th Symposium on Combinatorial Pattern Matching (CPM'96), June 1996, Laguna Beach, California, Lecture Notes in Comput= er Science 1075, pp. 271-287, Springer-Verlag.=

&nb= sp;

154.=       B. Sandak, H.J. Wolfson and R. Nussinov<= /b>, Hinge-Bending at Molecul= ar Interfaces : Automated Docking of a Dihydroxyethylene-Containing Inhibitor = to the HIV-1 Protease, Biological Struct. & Dynamics<= /span>, Proc. of the Ninth Conversation, State Univ. of New York, Albany, Eds. R.H. Sarma & M.H. Sarma, pp. 233-248, Adenine Press, Albany, NY, 1997= .

155.=       R. Norel, S.L. Lin, D. Xu, H.J. Wolfson, and R.Nussinov, Molecular Surface Variability and Induced Conformational Changes upon Protein-Protein Associations, Structure, Motion, Interaction and Expression of Biological Macromolecules, Proc. of the Tenth Conversation, State Univ. of New York, Albany, Eds. R.H. Sarma & M.H. Sarma, Vol. 2, pp. 33--51, Adenine Press, <= st1:place>Albany, NY, 1998= .

156.=       N. Leibowitz, Z.Y. Fligelman, R. Nussinov, H.J. Wolfson, Multiple Structural Alignment and Core Detection by Geometric Hashing, Proc. of the 7'th International Conference on Intelligent Systems in Molecular Biology, Heidelberg, Germany, August 1999= , pp. 169--177, (T. Lengauer et al., ed.’s),= AAAI Press, Menlo Park, California. Received the ISMB'99 outstanding paper award.

157.=       M. Shatsky, Z.Y. Fligelman, R. Nussinov, H.J. Wolfson, Alignment of Flexible Protein Structures <= span style=3D'font-size:12.0pt;mso-fareast-font-family:"MS Mincho";mso-bidi-font= -family: "Times New Roman";mso-fareast-language:EN-US'>Proc. of the 8'th Internation= al Conference on Intelligent Systems for Molecular Biology, San Diego, Ca., Au= gust 2000,= pp. 3= 29-343, (R. Altman et al.,ed.'s= ), AAAI Press, Menlo Park, California.

<= span style=3D'mso-list:Ignore'>158.=           M. Shatsky, R. Nussinov, H.J. Wolfson, MultiProt - a Multiple Protein Structural Alignment Algorithm, 2’nd Workshop on Algorith= ms in Bioinformatics (WABI’02 as part of ALGO’02), Rome, Italy, Se= pt. 2002, Lecture Notes in Computer Science 2452, pp. 235-250, Springer Verlag.=

<= span style=3D'mso-list:Ignore'>159.=           D. Duhovny, R. Nussinov, H.J. Wolfson, Efficient Unbound Dockin= g of Rigid Molecules, 2’nd Workshop on Algorithms in Bioinformatics (WABI’02 as part of ALGO’02), Rome, Italy, Sept. 2002, Lecture Notes in Computer Science 2452, pp. 185-200, Springer Verlag.

160.      =     A. Shulman-Peleg, S. Mintz, R. Nussinov and H. Wolfson, Protein-Protein Interfaces: Recognition of Similar Spatial and Chemi= cal Organizations, 4’th Int. Workshop on Algorithms in Bioinformatics (WABI’= ;04 as part of ALGO’04), Bergen, Norway, Lecture Notes in Computer Science, Vol. 3240, pp. 194--205, Springer Verlag (2004).=

161.      =     M. Shatsky,= A. Shulman-Peleg, R. Nussinov and H.J. Wolfson, Recognition of Binding Patterns Common to a = Set of Protein Structures, 9R= 17;th Int. Conf. on Research in Comp. Bio. (RECOMB’2005), Boston, MA, USA= , Lecture Notes in Bioinformatics, Vol. 3500, pp. 440—455,= Springer Verlag (2005).=

162.      =     K. Lasker, O. Dror, R. Nussinov, H.J. Wolfson, Discovery of protein structures in EM maps, 5’th Int. Workshop on Algorithms in Bioinformatics (WABI’= ;05 as part of ALGO’05), Mallorca, Spain, Lecture Notes in Bioinformatics, Vol. 3692, pp. 423--434, (2005).<= span style=3D'font-size:12.0pt;mso-bidi-font-family:"Times New Roman";mso-fareas= t-language: EN-US;mso-bidi-language:AR-SA'>

=

163.      =     A. Shulman-Peleg, M. Shatsky, R. Nussinov, and H.J. Wolfson, MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces, 1’st Int. Symp. on Comp. Life Sc. (CompLife’05), Konstanz, Germany, Lecture Notes in Bioinformatics, Springer Verlag , Vol. 3695, = pp. 91—103, (2005).=

164.      =     Y. Inbar, D. Schneidman-Duhovny, O. Dror, = R. Nussinov and H.J. Wolfson, Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules, 11’th Int. Conf. = on Research in Comp. Bio. (RECOMB'2007), Oakland USA, Apr. 2007, Lecture Notes in Compu= ter Science, Springer, Vol= . 4453, pp. 412-429, (2007).

Invited Papers= in Conference Proceedings

<= span style=3D'mso-list:Ignore'>165.=           H. Wolfson, E.Schonberg, A.Kalvin, Y. Lamdan, Solving Jigsaw Puzzles by Computer, ORSA/TIMS J. Nat. Meeting, = Miami Beach, Fl., Oct. 1986, p. 127 (abstract). Also 3'rd Israeli AI and Computer Vision Conf., Dec. 1986.

<= span style=3D'mso-list:Ignore'>166.=           J.T. Schwartz, H.J. Wolfson, Improved Shape-Signature and Matching Methods f= or Model-Based Robotic Vision, Proc. of the Workshop on Space Telerobotics, (ed. Rodriguez), Vol.II, NASA, Jet Propulsion Lab., Pasadena, California, January 1987, pp. 103-109.

<= span style=3D'mso-list:Ignore'>167.=           R. Hummel, H. Wolfson, Affine Invariant Matchin= g, Proc. of the DARPA Image Understanding Workshop, April 1988, Cambridge, Massachusetts, pp. 351-364.

<= span style=3D'mso-list:Ignore'>168.=           H.J. Wolfson, Object Recognition by Transformation Invariant Indexing,= ESPRIT Workshop on `Invariants for Recognition and Positioning' in conjunction with the 2'nd European Conf. on Computer Vision, May 1992, Genoa, Italy.

<= /p>
<= span style=3D'mso-list:Ignore'>169.=           H.J. Wolfson, <= span style=3D'font-size:12.0pt;mso-fareast-font-family:"MS Mincho";mso-bidi-font= -family: "Times New Roman";mso-fareast-language:EN-US'>Application of 3-D Pattern Matching to Drug Design, Proc. of the Japan-Israel Workshop on Computer Vision and Visual Communicat= ion (CVVC'94), Oct. 1994, , Israel, pp. 51-53.

Other Publicat= ions

<= span style=3D'mso-list:Ignore'>170.=           V.D. Milman, H. Wolfson, Topics in Finite Metric Spaces, Seminar on Geometrical Aspec= ts of Functional Analysis (1983-1984), Lecture No. IV.

&nb= sp;

171.      =     H. Wolfson, J.Bourgain's Proof of the Equivalence of Metric= and Standard Types, Israel Seminar on Geometrical Aspec= ts of Functional Analysis (1983-1984), Lecture No. XIII-1.

172.      =     I. Kirsh, H. Wolfson= , A New Method for Character Recognition= of Hebrew Handwriting, Eskenazy Inst. of Computer Sciences, Technical Report 241/92, Tel = Aviv University, (1992(.